The 2005-2007 timeframe 4 stroke 3 cylinder yamaha's (RS Chassis: Vector, Nytro), the original revision timing chain tensioner can fail, and the camshafts/valves get out of timing, and the valves crash into the pistons, basically junking the motor, especially since the sled is old enough and a "lower" value, not really worth fixing then. Some tensioners can last forever, but some can let go with little or no warning. There is a newer revision tensioner, yamaha started building engines with them around 07 and marks them with different color paint dot than the original, for traceability. I updated them on an 05 vector and an 06 nytro, for peace of mind. At the same time, I did the exhaust donuts since it was pretty much that far apart. Other issues I've had and read others had, the starter solenoid can stick, causing the starter to keep spinning while the engine is running. The design of the one-way starter gear is such that you really can't hear that the starter is running while under way, and it doesn't damage the starter or gearing by spinning while running. The damage comes in when the starter keeps spinning long enough, that it generates a lot of heat, and eventually just melts internally and fuses the rotor to the can, and continues to draw current, generating heat, and eventually runs the battery down to a low enough voltage that the ECM cuts spark and shuts the engine down.
Another issue that happened on both my sleds, right around the 10,000 mile mark, the exhaust pipe develops a crack, eventually all the way around the circumference, where the end of the single pipe that is the 3 into 1 assembly, plugs into the pipe that is leading to the muffler, about 1/2 to 3/4 of the way back to the rear of the sled. Also a pain to fix, you basically have to strip the seat and tank back down to the point of replacing the exhaust donuts. Couple hour job. Obnoxiously loud if not fixed.
Other than that, most yamaha 3 cylinder 4 stroke maintenance items will be just like any other high mileage sled! Suspension bushings start getting loose all the way around, bogey wheel bearings, shock rebuilds, clutch maintenance/rebuilds, etc.
The yamaha 4 stroke engines are really dependable. Just heavy. But for on trail riding, weight is a bit less of a concern.
I'm happy with the stock skis and handling on the vector and nytro, running 6" dooly's. Primarily its about having the suspension set-up and adjusted right for the driver. Skis do help, but suspension has to be set in the right ballpark first.